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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgacttcttggtgttgggttgaagttagataagctattagtattattatggttattctaaatctaattatctgaaattgtgtgtctatatttgcttcagGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTG

Basic information

species Glycine max
transcript GLYMA05G08060.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08060.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g04480.t01 (Vitis vinifera), 3'ss of exon 3
ctgacttcttggtgttgggttgaagttagataagctattagtattattatggttattctaaatctaatt--atctgaaattgtgtgtctatatttgctt--cagGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTG
     || |  ||     | |  |  | ||| |   || |   || ||  |  ||||   || || ||   |  |||     ||     || |     |  |||||||||  | ||||||||||| |||||||| | || ||| ||||||||||| ||||| ||||||||| |  | ||||| ||||||||||| ||||   | 
--acattatctgtagaaagctacaaat-gattattcataaac-ttctttggaatatttagaaactgatagaaattgatggattgaactgatttccatcttgcagGGGTGATGTTGTTCAAGTGGATACTTGGGTATGTGCATCTGGGAAGAATGGCATGCGTCGTGATTGGATAATCCGTGATTGCAAAACTGGGGAAACTCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318984|gb|GR830440.1|GR830440
EST:     ATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATG                         GGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGG
genomic: ATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGgttagtcatc ... tttgcttcagGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGG
EST: gi|254329908|gb|GR839461.1|GR839461
EST:     GGAACGCTATCCTACATG                         GGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGG
genomic: GGAACGCTATCCTACATGgttagtcatc ... tttgcttcagGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatggttattctaaatctaattatctgaaattgtgtgtctatatttgcttcagGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTG
                                             tttgcttc  CT-rich tract
       ttattctaaatctaat  TA-rich tract