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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactgttaacacttcccatttgtgtatgtccatacaccaggtccatgctcacatttataataacaatatttacttttcaatgctcgaagtaattattgttgttttgttcatgttcagCTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGGAAGCTTGCTTTATCAG

Basic information

species Glycine max
transcript GLYMA05G07920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgaactgttaacacttcccatttgtgtatgtccatacaccaggtccatgctcacatttataata-acaatatttacttttcaatgctcgaagtaattattgttgttttgttcatgttcagCTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGGAAGCTTGCTTTATCAG
               |||  |  ||||  |||| ||  |      || | |  | || || |  ||  |  |||| |||| |  | |        |  |  || ||   || | |||   |||||| || ||||| || || || || |||||||||||||||||||| || |||||||| |||||||||
-------------gtactaactgtttgattatgccctaatgatttgtacttcgtaactttgaccatttatgatatctactatgaattt------atgttagttattacattctccata--cagCTATGATCTGGAATTTACAGTGGCCCATAATCTTGTGGCTGTCAGCACTGGAAGCTTACTTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706242|gb|BW680657.1|BW680657
EST:     AGAGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTCGCAACGATGCTG                         CTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGG
genomic: AGAGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTCGCAACGATGCTGgtatgaactg ... tcatgttcagCTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatatttacttttcaatgctcgaagtaattattgttgttttgttcatgttcagCTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGGAAGCTTGCTTTATCAG
 taataac  putative branch site (score: 1)
                                       ttttgttc  putative PPT
                           taattattgttgtttt  TA-rich tract