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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcttatctattcttttgagaagaatataactttagacagctgtttcaagcttgaattgaccctttgtttggcatttttaacttttctttttttctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCAGAACCGAACTACAGAACCAACCCGTGCAAATGAAACATCTTCGCGTTCCCATGCAATTTTGCAG

Basic information

species Glycine max
transcript GLYMA05G07770.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g04330.t01 (Vitis vinifera), 3'ss of exon 3
gtaatgttcttatctattcttttgagaagaatataactttagacagctgtttcaagcttgaattgaccctttgtttggcatttttaacttttctttttttctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCAGAACCGAACTACAGAACCAACCCGTGCAAATGAAACATCTTCGCGTTCCCATGCAATTTTGCAG
                                 ||| |||      |  ||| | | |   || ||    | ||| |  | | ||   ||   |   | | |  ||||   ||||||||||||||||||||||||||||| |  ||| ||||||| |||||||||||||  |||||||| ||||| || |||||||| ||| |||||
--------------------------------gtaattttcttattcccttttaggatgacatagatagatggttag--actgttggattgagtcagtgtttgggttgtgacagGTGATGGCATTGCTTCAACAAGGAAACCTAAACAGAACTACTGAACCAACCCGTGTCAATGAAACTTCTTCACGGTCCCATGCTATTCTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgaccctttgtttggcatttttaacttttctttttttctttgttgcttcagGTGATGGCATTGCTTCAACAAGGAAATCAGAACCGAACTACAGAACCAACCCGTGCAAATGAAACATCTTCGCGTTCCCATGCAATTTTGCAG
                      ttttaac  putative branch site (score: 2)
                   catttttaacttttct  CT-rich tract
                    atttttaacttttctt  TA-rich tract