1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaccctcatatttcaaattaattgtttttttttacatgaatgctatataactatttatactaattgaggtcttacagttaaccaattttgaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAA
species | Glycine max |
transcript | GLYMA05G07020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTC GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCEST: gi|8670252|gb|BE191359.1|BE191359
genomic: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTC GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCEST: gi|7478352|gb|AW666231.1|AW666231
genomic: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTC GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCATAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
atataactatttatactaattgaggtcttacagttaaccaattttgaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAA
actatttatactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccctcatatttcaaattaattgtttttttttacatgaatgctatataactatttatactaattgaggtcttacagttaaccaattttgaataagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAA
-caccctc
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