1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctctctagatgattcatatcacatgtgcatagttttttgttcactgttcctaaacactttgatggacactttctgattattcagccttcttacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCT
species | Glycine max |
transcript | GLYMA05G05860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTGTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|21995147|gb|BQ786675.1|BQ786675
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTEST: gi|8284612|gb|BE022171.1|BE022171
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACT
EST: AAGCTACATTAAGGACTCATCTGTAGCTGTCATTGTTTATGATGTTGCAA GCCGGAAGACTATCCTAAACACATCEST: gi|192325163|gb|FK017534.1|FK017534
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATC
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|298193040|gb|HO033474.1|HO033474
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|13252783|gb|BG363686.1|BG363686
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|192321239|gb|FK014329.1|FK014329
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|31459979|gb|CD402007.1|CD402007
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: CTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|192322379|gb|FK014620.1|FK014620
genomic: CTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGEST: gi|192321240|gb|FK014330.1|FK014330
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
EST: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAA GCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
genomic: AAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAgtatgccatt ... tacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTG
gttcctaaacactttgatggacactttctgattattcagccttcttacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCT
ttcttac putative branch site (score: 2)
ccttcttac CT-rich tract
tgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctagatgattcatatcacatgtgcatagttttttgttcactgttcctaaacactttgatggacactttctgattattcagccttcttacgatatagGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - catatca
- - - - - - - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccttct