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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttatttgtttttggtttgctaaagattttttcatattatattatccaaatctaattcattatccatattgtggttatccggtgatttttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTTGCAAACCGG

Basic information

species Glycine max
transcript GLYMA05G05580.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409699|gb|EV279507.1|EV279507
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|192316102|gb|FK007163.1|FK007163
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|17023266|gb|BM094300.1|BM094300
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|192304797|gb|FG998799.1|FG998799
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAGAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|151410148|gb|EV279956.1|EV279956
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|192307027|gb|FK000005.1|FK000005
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAGAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|17023184|gb|BM094218.1|BM094218
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|213599163|gb|DB962242.1|DB962242
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGAATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|213620263|gb|DB961408.1|DB961408
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGAATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|192303847|gb|FG998199.1|FG998199
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
EST: gi|192316103|gb|FK007164.1|FK007164
EST:     TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAG                         GAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT
genomic: TTTTTAGGAGCATCAGCAGTTCTGTTGTCGATGACGGACTGATAAGCAAGgtactacata ... ttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccaaatctaattcattatccatattgtggttatccggtgatttttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTTGCAAACCGG
      atctaat  putative branch site (score: 3)
                                          tttttctttac  putative PPT
     aatctaattcattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttatttgtttttggtttgctaaagattttttcatattatattatccaaatctaattcattatccatattgtggttatccggtgatttttctttacagGAAGAATTCCAATTGGCAATCTTCAAAAACAAGAAAAAGGATAACCTTTTTGCAAACCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - -atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgatt