1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttaatctcgacctttgttggtttattcctggtttgaatgatcatctacttacatctaccatacgttctattgatatttgattttgttggtgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAA
species | Glycine max |
transcript | GLYMA05G03930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACG GAGAANAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAEST: gi|51336716|gb|CO980582.1|CO980582
genomic: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGgtatgtcact ... tgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAA
EST: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACG GAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAEST: gi|20811949|gb|BQ296427.1|BQ296427
genomic: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGgtatgtcact ... tgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAA
EST: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACG GAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAEST: gi|9901632|gb|BE610600.1|BE610600
genomic: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGgtatgtcact ... tgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAA
EST: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACG GAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAA
genomic: AAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGgtatgtcact ... tgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAA
ctacttacatctaccatacgttctattgatatttgattttgttggtgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAA
tattgatatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatctcgacctttgttggtttattcctggtttgaatgatcatctacttacatctaccatacgttctattgatatttgattttgttggtgctgagcagGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - ctcgacc
- - - - - - - ttgttgg
- - - - - - - - gttggtt
- - - - - - - - - - - - attcctg
- - - - - - - - - - - - - - - - - tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - tctacca