Sequence
atgc intronic sequence ATGC exonic sequencegtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
Basic information
species | Glycine max |
transcript | GLYMA05G02740.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 5
gtaagtatttaatttg-tgatgg-aatcat---ttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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gtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcagGTCTGTGAGAAGCTTGGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 3'ss of exon 5
gtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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gtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcagGTCTTTGAGAGGCTTGGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 3'ss of exon 5
gtaagtatttaatttg-tgatggaatcatttccccaatttacaaata-----atttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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gtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatatggtgcttaa-acgttggtgaatttggattaatggtgagcagGTCTTTGAGAGGCTTGGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacgg-tgaatttaaa-tggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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gtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacagGTATTTGAGAAGCTTGGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaacg---gtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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gtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------gtaagtatttaatttgtgatggaatcatt--tccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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ttctagatacagttcaggtgtataatt-atgtccaatcccttgttcttggccttgcatttatagtaatggtcatgat--tgttcaaactgggtaatcttg-cagGTTTGTGAAAGACTAGGACCGAGCTTATACGATTTCCTTCGAAAAAACAATTATCGACCATTTTCTGCAGATCTCGTTCGCGACTTTGGCCGCCAGCTGT
upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S425_6V6.2 (Physcomitrella patens), 3'ss of exon 5
-----------gtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggt--tttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
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tatccagggattcgcacattgagttcttg--gatacaacgtttgaaattactccctgaattaaggcgcgtacttcttttgtttactattggtaattatgcagGTGTGCGAGAGGCTGGGGCCAAGTTTGTACGATTTTCTTCGAAAAAACAATTATCGACCGTTTTCTGCAGATCTTGTTCGAGATTTTGGCCGCCAACTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21994008|gb|BQ785536.1|BQ785536EST: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
aatttaaatggtttta TA-rich tract