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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtctgatacaaactttttttattcctctgactttttaatggtcatatgaatgcatcacatgatgaccatcaccatgcccatttagtcctttccttaaataatatattggtccatatttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTG

Basic information

species Glycine max
transcript GLYMA05G02710.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02710.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g09490.t01 (Vitis vinifera), 3'ss of exon 3
gttggtctgat-acaaactttttttatt-----cctctg-actttttaatggtcat--atgaat---gcatcacatgat------gaccatcacc-------atgcccatttagtcctttccttaaata--------atatattggtccatatttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTG
|||||| | || || |  || ||| |||     | |||| |   ||||  | |  |  |||| |   | || |  || |        ||| | |         ||    ||    ||    |||||||         ||   ||  |     ||  ||||||||||||||||||||||| |||| | |||||  |||||||||||| | |||||||||||||| || |  || ||| | || |||||||| | ||||||||
gttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagccacctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcagGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562804|gb|BG551024.1|BG551024
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGT
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGT
EST: gi|151398608|gb|EV268479.1|EV268479
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
EST: gi|8283359|gb|BE020920.1|BE020920
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccatgcccatttagtcctttccttaaataatatattggtccatatttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTACATGGGTGCAAATATCAAAGATTTGTTCCAACAAATGACAAAAATGACTG
                        ttaaataatatattgg  TA-rich tract