1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgttagtaataaattccctcaatcaaattattttatctctgctgcttaattctgcaaattactggagcgaaggctagttaatactgtcatcgtgttcaattttctctctttttatgtcaatgtagcatttgtgccaattctttaatgacaatcatctccaacatgctccatattgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATAT
species | Glycine max |
transcript | GLYMA05G01680.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAG AAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGEST: gi|9565369|gb|BE474878.1|BE474878
genomic: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAGgtttgttagt ... attgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTG
EST: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAG AAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGEST: gi|192331889|gb|FK026673.1|FK026673
genomic: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAGgtttgttagt ... attgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTG
EST: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAG AAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAAAGACTCGTGTG
genomic: AGTTACATCAGATTGAGAACCAGCAGTCAAGTCTACTTGATCTTCTGCAGgtttgttagt ... attgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTG
atttgtgccaattctttaatgacaatcatctccaacatgctccatattgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATAT
ctttaat putative branch site (score: 4)
aattctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttagtaataaattccctcaatcaaattattttatctctgctgcttaattctgcaaattactggagcgaaggctagttaatactgtcatcgtgttcaattttctctctttttatgtcaatgtagcatttgtgccaattctttaatgacaatcatctccaacatgctccatattgtgacagAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC