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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgtgtttttttttcttttctttttttggtctgtgttctgaaatttaggggttttatatttttgtttagggtatgtgtttttttaagttctttaaagaaatgtaaaatttcctcttattttatttttagTTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348389|gb|BI973984.1|BI973984
EST:     GAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAA                         TTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGT
genomic: GAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAAgtgagttgtg ... ttatttttagTTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGT
EST: gi|209698296|gb|BW667574.1|BW667574
EST:     GAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAA                         TTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGT
genomic: GAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAAgtgagttgtg ... ttatttttagTTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttttttaagttctttaaagaaatgtaaaatttcctcttattttatttttagTTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACG
                                 tttcctcttattttat  CT-rich tract
                tttaaagaaatgtaaa  TA-rich tract