Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgccacatagaatctgtttcaatttctctagatttgtttgcaatttaagtttttttttttaaaaaaaattattgatgtttgttttaatttcttgggaggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAGGAGTTCTCGTGAAAGTGGGATCTCGGATTCAAATGCTTCAACCACCACT

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054062|gb|BM732729.1|BM732729
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|213619802|gb|DB967424.1|DB967424
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGGTGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|7796823|gb|AW782217.1|AW782217
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|213615386|gb|DB965651.1|DB965651
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGGTGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAGCATGCCA                  
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T-----T--CAgtgagtgcca ... ggc
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAGCATGCCA                  
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T-----T--CAgtgagtgcca ... ggc
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|209720190|gb|BW674528.1|BW674528
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGGTGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|16104724|gb|BI892464.1|BI892464
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGTTTATAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         G
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccag-
EST: gi|8283506|gb|BE021065.1|BE021065
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA                         AGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAgtgagtgcca ... ggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAG
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAGCATGCCA                  
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T-----T--CAgtgagtgcca ... ggc
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCAGCATGCCA                  
genomic: CAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T-----T--CAgtgagtgcca ... ggc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttaaaaaaaattattgatgtttgttttaatttcttgggaggcatgccagAGCTTTAGATAAACAAGTTTCGATGCTTCAGATGGAACTAGCAGCAGCTAGGAGTTCTCGTGAAAGTGGGATCTCGGATTCAAATGCTTCAACCACCACT
                             ttttaat  putative branch site (score: 3)
     tttaaaaaaaattatt  TA-rich tract