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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatatatattttgcattttattattcttttcccttgaatatgaaccaatgtgtaaggctgatatatatatagcctggtgagttactttaataactttagattcttctaatctttggtttcgtttgaccgtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA

Basic information

species Glycine max
transcript GLYMA04G43150.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43150.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 3'ss of exon 2
gtaataatatatattttgcattttattattcttttcccttgaatatgaaccaatgtgtaaggctgatatatatatagcctggtgagttactttaataactttagattcttctaatctttggtttcgtttgaccgtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA
       ||  | || |   |||||  | || |     ||||   ||   ||     |   | | | |     | |     | | |  |     | |  | | |  |    | ||   || ||          |  |||||||||||||||| |||||||| |||||||| || |||||||| ||| | || ||  |||||||||| ||||||||||| ||||| || || || || || |
------gtacgtgttctttcttttagaaatcatgaaatttgag-gtgcttcagccatttttgttaaaacgagaagaaagaagaggggaaaggggaca--tatgggcttgattcataagtgattca-------tgcatgcagTGGTTTGAAGTCCTTGATGGGCTTTTGGGGAAGCACTGGAGGAATGTAGGCCTACTTTTCAACTGCACTTTCCTTCTCTTTGGCTCCGTGATACAGCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttaataactttagattcttctaatctttggtttcgtttgaccgtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA
     ttaataactttagatt  TA-rich tract