1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caatacttcaaaatcaattctattaaaacttaaaacaaagatagttccaagtaaaagtttgtgtctgtttttagtcccttaccatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTA
species | Glycine max |
transcript | GLYMA04G42040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAAEST: gi|192305144|gb|FG994694.1|FG994694
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG GTATGGTTTGCCTTTTGTGTTTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
tccaagtaaaagtttgtgtctgtttttagtcccttaccatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTA
cccttac putative branch site (score: 3)
tttttac putative PPT
atttttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatacttcaaaatcaattctattaaaacttaaaacaaagatagttccaagtaaaagtttgtgtctgtttttagtcccttaccatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTGATAGAAATCATATACGTGTTGATCTTCATCGTA
- - - - caaaatc
- - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - ccaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtctg