1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tattttacagtcatgcataaaagctcactttcatagttgagatgtgtattgtgtatgaaatgattgctactgatggctttagtatctattctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAG
species | Glycine max |
transcript | GLYMA04G41600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|22525271|gb|BU084082.1|BU084082
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|254325922|gb|GR838803.1|GR838803
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|254327481|gb|GR837104.1|GR837104
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|192295186|gb|FG986905.1|FG986905
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|298177837|gb|HO027390.1|HO027390
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgggtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
gtattgtgtatgaaatgattgctactgatggctttagtatctattctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAG
tactgat putative branch site (score: 2)
tctattct putative PPT
tttagtatctattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttacagtcatgcataaaagctcactttcatagttgagatgtgtattgtgtatgaaatgattgctactgatggctttagtatctattctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAGGAGGTCTTGGTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - tcatgca
- - - - - - - - - - - - -cactttc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctact