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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacattttctgctttgccttgtttctgattttttttttccaagttaaacaaggtaaatgcttataggagctcaaactagttcaacttcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGCTTTCTTTCAATGGTTTTATTCGGGTGGTGATAACTGTGGATTTGTTAAG

Basic information

species Glycine max
transcript GLYMA04G41020.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409918|gb|EV279726.1|EV279726
EST:     GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAA                         GAAGCAG-TTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
genomic: GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAAgtatgaacat ... tcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
EST: gi|151409940|gb|EV279748.1|EV279748
EST:     GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAA                         GAAGCAG-TTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
genomic: GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAAgtatgaacat ... tcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
EST: gi|208333597|gb|GE129526.1|GE129526
EST:     GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAA                         GAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
genomic: GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAAgtatgaacat ... tcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
EST: gi|26045712|gb|CA783212.1|CA783212
EST:     GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAA                         GAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC
genomic: GCTGTTCTTATTAACGGGTTCCATACTCCTAAAGGAGATGTTATGGCCAAgtatgaacat ... tcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaaacaaggtaaatgcttataggagctcaaactagttcaacttcttttgcagGAAGCAGGTTCATGGTTTCTTGAAATTCTTCTCAGCCAGTTTCCTCTGGGCTTTCTTTCAATGGTTTTATTCGGGTGGTGATAACTGTGGATTTGTTAAG
                                           cttcttttgc  CT-rich tract
                                            ttctttt  TA-rich tract