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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttatatcatctgaagattattattaataaaaacactaaagggtagccatattgatatttgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT

Basic information

species Glycine max
transcript GLYMA04G41010.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41010.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os10g37420.2 (Oryza sativa), 3'ss of exon 3
--------------gtatgcttatatcatc--tgaagattattattaataaaaacactaaagggtagccatattgatatttga------tcatgctctgtggattac--agGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT
               | |  ||  || ||   ||| ||   | | |   || |  | ||||   | ||||| |  ||||   |       | | ||||       ||  ||| ||||| ||||||||||||||||||||  |||| |||||||| || || || || |||||||| || ||   |||||| ||||||||| | |||||  |
gtgagatatattttctttcatttcataattaatgatgaaactgactgtcaacattattaaaccattgccatctcaatatcaaagctgacccctcctctccaatgcacgtagGCAAAGACGCAACCAATGATTTTGAAGACATTGGCCACAGTGAATCAGCAAGGGAGATGATGGAGAAGTATCTCATTGGGGAGATTGATGCTTCAACCAT

upper sequence: GLYMA04G41010.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G074169_T04 (Zea mays), 3'ss of exon 3
gtatgcttatatcatctgaagattattattaataaaaacactaaagggtagccatattgatatttgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT
       ||   |||     |||| |  || |      ||     |           |||| | |  || ||   |||      ||||||||||||| ||   ||||||||||||| |||| ||||||||||| || || || |||||||| || ||| |||| ||  |||| ||| | |||||  |
------gtaagccatacatcgattgtacttcacgtttgcagccttgat--attgagctgatctctactcttgaa-tgtaac---cagGGAAAGATGCTACAGCTGATTTTGAAGATATTGGCCACAGTGATTCCGCAAGGGACATGATGGAGAAGTACCACATCGGGCAGATAGATGCTTCAACAAT

upper sequence: GLYMA04G41010.3 (Glycine max), 3'ss of exon 3
lower sequence: AT5G53560.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatg---cttatatcatctgaagattattattaataaaaacactaaagggtagccatattgatatttgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT
||||    ||| | |        ||||             |  |     |||  |  | |   | | ||||  || | | | | || ||||||||||||| || |||||||||||||| ||||| ||||| ||  |||| || || |||||||| ||||| | |||||||||||||||||| || | |||
gtataaaacttgtgtttctctctgattcaaggcggatttgaagcggctcggtgactgtttctgt-tctgat-gtggtgttttgtttgcagGGAAAGATGCTACAAATGATTTTGAAGACGTTGGTCACAGCGACACTGCAAGGGACATGATGGACAAATATTTCATTGGTGAGATTGATTCGTCTAGTGT

upper sequence: GLYMA04G41010.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0098g01230.t01 (Vitis vinifera), 3'ss of exon 3
----gtatgcttatatcatctgaagattat---------tattaataaaaacactaaagggtagccatattgatatt-tgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT
    ||   | ||||||| ||  ||   ||         | ||    |  | ||  |   ||  || ||   | |   |||      | | |    | ||||||| ||||| || ||||||||||||||||| || ||||||||| | || ||||| ||||||||||||||||||||||||||||| ||| | ||||  ||
gtaagttatcatatatcacctctagccaatctcacaccctgttgtctaccaaaccgattagtgcccctacacacaaagtgactgaattttctt--ctgcagGGAAGGATGCGACAAATGATTTTGAAGATGTAGGCCACAGTGATGCAGCCAGAGACATGATGGAAAAATACTACATTGGTGAGATCGATCCCTCAAGCGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192925|gb|CF922131.1|CF922131
EST:     TTTTATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|192328360|gb|FK020071.1|FK020071
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|8402825|gb|BE058459.1|BE058459
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|7590130|gb|AW705890.1|AW705890
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|213620027|gb|DB965361.1|DB965361
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|38191484|gb|CF920690.1|CF920690
EST:     TTTCATGGAGGATCATCCCGGAGGCGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTCGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|6747130|gb|AW317586.1|AW317586
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|38193002|gb|CF922208.1|CF922208
EST:     TTTTATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCACCAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|209716781|gb|BW665459.1|BW665459
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|193406887|gb|FK370974.1|FK370974
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|151410956|gb|EV280771.1|EV280771
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|254327788|gb|GR834753.1|GR834753
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|151395715|gb|EV265592.1|EV265592
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|6964614|gb|AW433307.1|AW433307
EST:     GGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: GGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|151405035|gb|EV274849.1|EV274849
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298166517|gb|HO009956.1|HO009956
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATCTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298190009|gb|HO032130.1|HO032130
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|8286466|gb|BE024034.1|BE024034
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298192631|gb|HO033065.1|HO033065
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298184892|gb|HO030105.1|HO030105
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298198946|gb|HO042309.1|HO042309
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|213593859|gb|DB981327.1|DB981327
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298187493|gb|HO034642.1|HO034642
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|213618064|gb|DB963697.1|DB963697
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298163861|gb|HO012594.1|HO012594
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298191726|gb|HO035808.1|HO035808
EST:     TTCCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|192298149|gb|FG991669.1|FG991669
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298198862|gb|HO042225.1|HO042225
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATACAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|254340061|gb|GR858186.1|GR858186
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|254340980|gb|GR854708.1|GR854708
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|213587427|gb|DB982808.1|DB982808
EST:     GGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: GGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|209697793|gb|BW663937.1|BW663937
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|209716782|gb|BW665460.1|BW665460
EST:     TTCATGGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTCAT-GGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|17020763|gb|BM091797.1|BM091797
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|207816569|gb|GD787438.1|GD787438
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTG
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTG
EST: gi|151412043|gb|EV281855.1|EV281855
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|254340060|gb|GR858185.1|GR858185
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|254330905|gb|GR842170.1|GR842170
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|209697792|gb|BW663936.1|BW663936
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|207786088|gb|GD756199.1|GD756199
EST:     TGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298180412|gb|HO021965.1|HO021965
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298170396|gb|HO019020.1|HO019020
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|298165228|gb|HO011277.1|HO011277
EST:     TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
EST: gi|151400325|gb|EV270139.1|EV270139
EST:     TTTCATGGAGGATCATCCCGGGGGTGATGAAGTTTTGTTATCTGCAACAG                         GGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA
genomic: TTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAGgtatgcttat ... tggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaacactaaagggtagccatattgatatttgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT
                     atattgatatttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttatatcatctgaagattattattaataaaaacactaaagggtagccatattgatatttgatcatgctctgtggattacagGGAAAGATGCAACCAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGATATGATGGAAAAATACTACATTGGTGAGATTGATTCATCAACTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA