1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actacttgaaaaaatgattgtcttatattttgagataaaataatatgcattgctgctggtcttcacagccattatgcttataaataattgtgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG
species | Glycine max |
transcript | GLYMA04G40980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|151398433|gb|EV268304.1|EV268304
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|13240099|gb|BG359408.1|BG359408
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAN GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|208319895|gb|GE116310.1|GE116310
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|213592793|gb|DB981297.1|DB981297
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|151410135|gb|EV279943.1|EV279943
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|18719025|gb|BM523129.1|BM523129
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|192324803|gb|FK016874.1|FK016874
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|213618032|gb|DB963665.1|DB963665
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|192317237|gb|FK009810.1|FK009810
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAA-GAAGTGEST: gi|21639171|gb|BM140217.1|BM140217
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|58023032|gb|CX709773.1|CX709773
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|208036764|gb|GD833923.1|GD833923
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: AGGATAAGACGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|254318519|gb|GR832687.1|GR832687
genomic: AGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|57574032|gb|CX547007.1|CX547007
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|151412758|gb|EV282570.1|EV282570
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGEST: gi|207820974|gb|GD790893.1|GD790893
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
EST: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAA GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
genomic: TTGATGGCACTGGCGAGGAAATATAACCAGGATAAGATGATCTGCCGCAAgtaagtttac ... tgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTG
tgcattgctgctggtcttcacagccattatgcttataaataattgtgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG
attatgcttataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacttgaaaaaatgattgtcttatattttgagataaaataatatgcattgctgctggtcttcacagccattatgcttataaataattgtgctttgcagGTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-ctacttg
- - - - aaaaaat
- - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaataa