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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaattcaaacatgtcacaataagctgtttttatatttgacatattcatcatcatattctaaatgaatttcagtccaacattcagGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATG

Basic information

species Glycine max
transcript GLYMA04G40770.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397932|gb|EV267805.1|EV267805
EST:     TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAG                         GTATCCCGGTTATCCTCACCCACAAGACTTGTATGAAATG
genomic: TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGgtatgcaatt ... caacattcagGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatttgacatattcatcatcatattctaaatgaatttcagtccaacattcagGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATG
                          ttctaaa  putative branch site (score: 2)
                       atattctaaatgaatt  TA-rich tract