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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaattcaaacatgtcacaataagctgtttttatatttgacatattcatcatcatattctaaatgaatttcagTCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATG

Basic information

species Glycine max
transcript GLYMA04G40770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687925|gb|BF595601.1|BF595601
EST:     TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAG                         TCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAAT
genomic: TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGgtatgcaatt ... tgaatttcagTCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAAT
EST: gi|151397932|gb|EV267805.1|EV267805
EST:     TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAG                         -----------G-TATCCCGGTTATCCTCACCCACAAGACTTGTATGAAAT
genomic: TATTATAACCAGCACATACCCCACTATCCATTTCCGTATCCAGCCTACAGgtatgcaatt ... tgaatttcagTCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataagctgtttttatatttgacatattcatcatcatattctaaatgaatttcagTCCAACATTCAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATG
                                      ttctaaa  putative branch site (score: 2)
         tttttatatttgacat  TA-rich tract