1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacagatagatttgcttcttttattgtttttgttcaccctgatttgatttttcatgcactggaattattgatttagttcctatgttgttgttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTACTGGATGGCAAATTATTCTCCCCTGTACTTGCACATATTCAACCAGAAT
species | Glycine max |
transcript | GLYMA04G40450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG GAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTAEST: gi|6567338|gb|AW234949.1|AW234949
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
EST: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG GAGTTTCAACCATTGAACTTTGATATATATTATGATGACCCAAGAAGCGAGEST: gi|193630612|gb|FK580903.1|FK580903
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGA---CCCAAGAAGCGAG
EST: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG GAGTTTCAACCATTGAACTTTGATATATEST: gi|120492006|gb|EH220173.1|EH220173
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATAT
EST: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG GAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTAEST: gi|208334740|gb|GE128289.1|GE128289
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
EST: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG GAGTTTCAACCATTGAACTTTGATATATAT
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATAT
gatttttcatgcactggaattattgatttagttcctatgttgttgttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTACTGGATGGCAAATTATTCTCCCCTGTACTTGCACATATTCAACCAGAAT
tattgat putative branch site (score: 3)
aattattgatttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagatagatttgcttcttttattgtttttgttcaccctgatttgatttttcatgcactggaattattgatttagttcctatgttgttgttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTACTGGATGGCAAATTATTCTCCCCTGTACTTGCACATATTCAACCAGAAT
- - - - - - tgcttct
- - - - - - - - - - - - - - - - ttcaccc
- - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg