1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagtcttgtgttctctttctgatgtatcctaaaaaaatactgacagagttagtcctgtgttagccatataatggttaattgtgtgacaaaattattgcagGAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAA
species | Glycine max |
transcript | GLYMA04G40420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGACAAGACCTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTG GAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATATEST: gi|151395353|gb|EV265224.1|EV265224
genomic: CTCTTGACAAGACCTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTGgtgagtttag ... attattgcagGAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATAT
EST: CTCTTGACAAGACCTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTG GAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATAT
genomic: CTCTTGACAAGACCTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTGgtgagtttag ... attattgcagGAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATAT
gagttagtcctgtgttagccatataatggttaattgtgtgacaaaattattgcagGAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAA
ggttaat putative branch site (score: 4)
atataatggttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtcttgtgttctctttctgatgtatcctaaaaaaatactgacagagttagtcctgtgttagccatataatggttaattgtgtgacaaaattattgcagGAGTCCATTAATATGGCTGCAAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAA
- - - tgtgttc
- - - - - - - - -tctgatg
- - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga