1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaaaacaaaattgctcaagttgcacaataactaaaagaaaagcagttggatgcccaggtttgaattgtgttctatgctaagattttgtgtcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTAAATGGGAAG
species | Glycine max |
transcript | GLYMA04G40290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|208121367|gb|GD919846.1|GD919846
genomic: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: TGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|208222388|gb|GE020826.1|GE020826
genomic: TGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: TATGCTTCAGACAGTTACAG-TCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|208056872|gb|GD851205.1|GD851205
genomic: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: AAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|17024092|gb|BM095126.1|BM095126
genomic: AAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|193463036|gb|FK427801.1|FK427801
genomic: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: ACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAEST: gi|120529430|gb|EH257564.1|EH257564
genomic: ACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
EST: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGA ATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
genomic: TATGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATCGAgtatgtattg ... tcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGA
gttggatgcccaggtttgaattgtgttctatgctaagattttgtgtcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTAAATGGGAAG
taagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaacaaaattgctcaagttgcacaataactaaaagaaaagcagttggatgcccaggtttgaattgtgttctatgctaagattttgtgtcattgtcagATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTAAATGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -aaacaaa
- - - - - - - - - - -tgcacaa
- - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - ggatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg