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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtctttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTC

Basic information

species Glycine max
transcript GLYMA04G37370.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37370.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtc--tttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTC
|| || |    | ||  |  |   |  |  |  |||| || ||||    |     |   ||| | | ||||| |  || |||| |||   |  |       |||  |||||||| | ||    ||| |||||| ||||||| |||||    ||  |||||||||| || |||||||| |||||||| ||||| ||||| ||  | |||||||||||||| ||||
gtttgacttg-aattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggcttta-cttgtttcacaaaaccattcccttttgtggctgaa----gGACATAGCAACAAGAGTCATTGCTCGTGAACTTAATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000401|gb|BI321215.1|BI321215
EST:     TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAG                         GATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
genomic: TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaa ... ttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
EST: gi|11412897|gb|BF424908.1|BF424908
EST:     TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAG                         GATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
genomic: TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaa ... ttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTC
             aacttac  putative branch site (score: 2)
         ttttaacttacata  TA-rich tract