1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatttgttagattttaatttcatttttcactgttctttgttcctttggctgaggcagagttttttgtttttgtgctaattgctgcaaattaaaatgatgggttttatctatttgcattgtgtttgatcttgaattctgactgttggctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGG
species | Glycine max |
transcript | GLYMA04G37030.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|254321270|gb|GR824587.1|GR824587
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298181405|gb|HO022844.1|HO022844
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|6719165|gb|AW306812.1|AW306812
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|58021915|gb|CX708656.1|CX708656
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: TATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTG-AGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298196386|gb|HO041129.1|HO041129
genomic: TATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|17400147|gb|BM176929.1|BM176929
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|9439733|gb|BE440247.1|BE440247
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|18041174|gb|BM309468.1|BM309468
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|8827593|gb|BE211323.1|BE211323
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298189385|gb|HO037788.1|HO037788
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|120533672|gb|EH261805.1|EH261805
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|213618293|gb|DB973063.1|DB973063
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|192333182|gb|FK026511.1|FK026511
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|254322198|gb|GR837612.1|GR837612
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298198281|gb|HO039820.1|HO039820
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|15814359|gb|BI786634.1|BI786634
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|192319717|gb|FK013759.1|FK013759
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|18716094|gb|BM522869.1|BM522869
genomic: GTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|192299603|gb|FG987735.1|FG987735
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|17519181|gb|BM188223.1|BM188223
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|6227844|gb|AW156443.1|AW156443
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298198546|gb|HO040085.1|HO040085
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|193340871|gb|FK307148.1|FK307148
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTAGAAAGAAAATTAATCGAAATCAATCCEST: gi|298175351|gb|HO016010.1|HO016010
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGT-GAA-GAAAATTA-TCGAAATCAATCC
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGCGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|192319718|gb|FK013760.1|FK013760
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|151411725|gb|EV281536.1|EV281536
genomic: GTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|192322800|gb|FK014491.1|FK014491
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|6502002|gb|AW203375.1|AW203375
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298167708|gb|HO012971.1|HO012971
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|298172907|gb|HO019891.1|HO019891
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGATATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|58014664|gb|CX701406.1|CX701406
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGAEST: gi|14126592|gb|BG791030.1|BG791030
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
EST: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT CGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtattt ... ctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGA
ttttatctatttgcattgtgtttgatcttgaattctgactgttggctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGG
ttctgac putative branch site (score: 2)
ctgtctcc putative PPT
tctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatttgttagattttaatttcatttttcactgttctttgttcctttggctgaggcagagttttttgtttttgtgctaattgctgcaaattaaaatgatgggttttatctatttgcattgtgtttgatcttgaattctgactgttggctgtctccagCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT