Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttactgactttttggctagcatattcttttgtgctttgtaggttgttctattacttactttatgcttatcttatattcaacagCATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAG

Basic information

species Glycine max
transcript GLYMA04G36700.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36700.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 3'ss of exon 3
gtattttactgactttttggctagcatattcttttgtgctttgtaggttgttctattacttactttatgcttatcttatat--tcaacagCATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAG
|||| ||     |||||  ||  |  |||| || | |  ||  |  | || |    ||  | || |     | |  ||| |  |   ||||||||  ||||| |||||||| |||||||||||  | || |||| |||||||| | |  | |||||||||||| | |||||||| || |||||||||
gtatgtt----gcttttgagcatggttatttttatat-tttaatgagctgctgctatagcttctctgctaatgttctatgtggtttgcagCATTGTCGATTTCTTCAAAGAGCTTCCACAGTTCATCGTCAAGGTTGGTCCAATTCTTGGAAATCTATATGGCCCCGATTGGGAGAAAAGGCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgctttgtaggttgttctattacttactttatgcttatcttatattcaacagCATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAG
                       tacttac  putative branch site (score: 1)
                    tattacttactttat  TA-rich tract