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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaattttttatttcctgtttgcttgatgtcatttgatttgaaaattatgtaagtggtgtgtatctgaacttagttccattttattgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT

Basic information

species Glycine max
transcript GLYMA04G36460.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321447|gb|GR824764.1|GR824764
EST:     TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
EST: gi|17998797|gb|BI273649.1|BI273649
EST:     ACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: ACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
EST: gi|193641366|gb|FK593200.1|FK593200
EST:     CTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: CTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaattatgtaagtggtgtgtatctgaacttagttccattttattgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
                                       ttttatt  CT-rich tract
                                      attttattgtttt  TA-rich tract