1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctaacaaaaactataacaattaatatttgctgataaaaaaaaaatgaacccatagttggaaccctggattagcagattgataattgttgtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTTATTGACCAGTTGAAGCC
species | Glycine max |
transcript | GLYMA04G36430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTG ATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGEST: gi|151396606|gb|EV266483.1|EV266483
genomic: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTGgtatggtttc ... gtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTG
EST: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTG ATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGEST: gi|18040978|gb|BM309272.1|BM309272
genomic: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTGgtatggtttc ... gtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTG
EST: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTG ATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTG
genomic: TGCTGCAGCTGCACAATTGAAAGATGGTTCCCTTTCTGTCCATGCTGGTGgtatggtttc ... gtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTG
atgaacccatagttggaaccctggattagcagattgataattgttgtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTTATTGACCAGTTGAAGCC
gattgat putative branch site (score: 4)
attgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctaacaaaaactataacaattaatatttgctgataaaaaaaaaatgaacccatagttggaaccctggattagcagattgataattgttgtgttaacagATGGAAGGCAAGGTTGGCCAGAGTTTGCCCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTTATTGACCAGTTGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
tgctaac
- - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -acccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgga