1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaagggcagggtgaaaaaatatatcaaattaactacttttaccgtttattggttttttttttttttatgattatctgatatagggtttttgttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGAGCGTTATCTCATGTAGTTCCCCATGTCAGCTGCT
species | Glycine max |
transcript | GLYMA04G36420.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGCCAATTAGGGT-AGTGTTGCCGAGGACAGGCCAAGGEST: gi|18848478|gb|BM567697.1|BM567697
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGGCA-TTANGGGTGAGTGTTGCCGAGGAC-GGCCCAAEST: gi|23728471|gb|BU762290.1|BU762290
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTA-GGGTGAGTGTTGCCGAGGACAGGCC-AA
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
ttattggttttttttttttttatgattatctgatatagggtttttgttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGAGCGTTATCTCATGTAGTTCCCCATGTCAGCTGCT
atctgat putative branch site (score: 4)
tttttgtt putative PPT
ttttttttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagggcagggtgaaaaaatatatcaaattaactacttttaccgtttattggttttttttttttttatgattatctgatatagggtttttgttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGAGCGTTATCTCATGTAGTTCCCCATGTCAGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - ggcaggg
- - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttt