1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgtattctaagtctttcctttgaaggaaaaatagaaatatttggcgcattgagaattaatttatttttatgttaattctttgttctgttctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG
species | Glycine max |
transcript | GLYMA04G35730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAG TTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGEST: gi|7145742|gb|AW507664.1|AW507664
genomic: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAGgttagatata ... tctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTG
EST: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAG TTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTTEST: gi|192301535|gb|FG998443.1|FG998443
genomic: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAGgttagatata ... tctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTT
EST: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAG TTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTTEST: gi|207809955|gb|GD781931.1|GD781931
genomic: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAGgttagatata ... tctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTT
EST: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAG TTTCCTACACCGTGGGTGGTTGGTT
genomic: CCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAGgttagatata ... tctcttacagTTTCCTACACCGTGGGTGGTTGGTT
gcgcattgagaattaatttatttttatgttaattctttgttctgttctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG
tgttaat putative branch site (score: 3)
ttctttgttctgttct CT-rich tract
ttgagaattaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtattctaagtctttcctttgaaggaaaaatagaaatatttggcgcattgagaattaatttatttttatgttaattctttgttctgttctcttacagTTTCCTACACCGTGGGTGGTTGGTTCTCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
catgtat
- - - - - - - - -tcctttg
- - - - - - - - - - - - - - aaaaata