Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATA

Basic information

species Glycine max
transcript GLYMA04G34170.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34170.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 3
gtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATA
           || ||   | |    ||| | | |     || |   | ||  ||||    |     |||||| | || ||      |    || | ||| |   | || |   |   |||| ||||||||| |||| || ||||||||||| |||||||| || || ||||| || ||||||||||| ||||| ||||||||||| || |
-----------tcctttttgta---tttattggcattttgttcttgtacgt--gtcaccaattgtactcttttac-atgtta-acactgtcaaattatgttt---acttcgccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACA

upper sequence: GLYMA04G34170.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110983_T04 (Zea mays), 3'ss of exon 3
gtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATA
        |  ||||       | | | |||||       || |||   | ||   |     || | | |  |||  || | ||  | | ||         || | ||||    |  ||||| ||||| ||| ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||| | ||||| ||||| || |
------acagctcttagattctg-tgtcactagcttgtctttctga---gcttacta-----catggtttgcttctgtcctttgactgatatgctaac---tcctgtttta---ttctcagGTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACA

upper sequence: GLYMA04G34170.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATA
             || | |    || || ||  | |||  ||  |||| |  ||  |  |      || |  ||| ||    |   | | ||   |     |    ||||||||| || ||| ||||| || ||||| || |||||| | ||||| |||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||
-------------ttaatcttctattttcctttataactgtta-gaaaggcatggaacattc----ttttagttcgattccat---tcaaatctataaagatatccttttgagttctttagGTACGTTTAAATTGACACTTCAGTTTTCGGAGGAGTATCCAAACAAACCACCAACAGTGCGATTTGTTTCCCGTATGTTCCATCCAAATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057599|gb|CA800513.1|CA800513
EST:     ACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: ACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|298176667|gb|HO026788.1|HO026788
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATTCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|13311815|gb|BG405466.1|BG405466
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|21675821|gb|BQ628172.1|BQ628172
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|8826329|gb|BE210059.1|BE210059
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|10710248|gb|BF009972.1|BF009972
EST:     TCCTGATGATACTTCATGGGATGGAC                         GCACGTTCAAG
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAG
EST: gi|19937736|gb|BQ081401.1|BQ081401
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|9258746|gb|BE346893.1|BE346893
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|19937295|gb|BQ081233.1|BQ081233
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|10709694|gb|BF009418.1|BF009418
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193335969|gb|FK300669.1|FK300669
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAAATAAAACC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAA-TAAA-CC
EST: gi|4313968|gb|AI461087.1|AI461087
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193336100|gb|FK301500.1|FK301500
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|151406462|gb|EV276277.1|EV276277
EST:     TCCTGATGATACCCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254315330|gb|GR825139.1|GR825139
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|15286715|gb|BI470606.1|BI470606
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|7284147|gb|AW596745.1|AW596745
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|27424249|gb|CA935769.1|CA935769
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|9566017|gb|BE475588.1|BE475588
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254315329|gb|GR825138.1|GR825138
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|151409661|gb|EV279469.1|EV279469
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193669561|gb|FK614065.1|FK614065
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|192297673|gb|FG989937.1|FG989937
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254330304|gb|GR841569.1|GR841569
EST:     TCATATTTGGTCCTGAGGATACTCCATGGGATGGAGG                         GCACGTTCAAAGTTGACTCTCCCAGTTTACTGAGGATTATCCAAAATAAA
genomic: TCATATTTGGTCCTGATGATACTCCATGGGATGGA-Ggtgagtggat ... agttattcagGCACGTTC-AAGTTGACTCT-CCAGTTTACTGAGGATTATCC-AAATAAA
EST: gi|14990785|gb|BI316458.1|BI316458
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|23733374|gb|BU764884.1|BU764884
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|213603132|gb|DB960423.1|DB960423
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|6847744|gb|AW350034.1|AW350034
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCACCAACTGTGCGATTTGTGTCTCGCATGTTTCATCCAAATA
                      acataac  putative branch site (score: 3)
                                     atattttgagttatt  TA-rich tract