1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctattgtgtttacattgtcatgattatatgtagagagatgattaggctgggggcaagtactaaactacttgtggttaaattgtctgaatctattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATTCCTTACTTCAGCGGCGCGGCCTACGTTTATGAGCACTATGTGAGACCT
species | Glycine max |
transcript | GLYMA04G33880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATEST: gi|298182365|gb|HO026540.1|HO026540
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATEST: gi|298190156|gb|HO032277.1|HO032277
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATEST: gi|298176531|gb|HO023118.1|HO023118
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATEST: gi|298181555|gb|HO025730.1|HO025730
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
gctgggggcaagtactaaactacttgtggttaaattgtctgaatctattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATTCCTTACTTCAGCGGCGCGGCCTACGTTTATGAGCACTATGTGAGACCT
tactaaa putative branch site (score: 1)
tctatttt putative PPT
aatctatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattgtgtttacattgtcatgattatatgtagagagatgattaggctgggggcaagtactaaactacttgtggttaaattgtctgaatctattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCATTCCTTACTTCAGCGGCGCGGCCTACGTTTATGAGCACTATGTGAGACCT
- - - - - - - -tgtcatg
- - - - - - - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - - - - ggctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg