1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgaaaggataaataagaatctggttcatttgaaatcaatctagagacaaacatttttttccaatttgttgttatcaataacttttcactgacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCT
species | Glycine max |
transcript | GLYMA04G33180.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|192310836|gb|FK000322.1|FK000322
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|192310835|gb|FK000321.1|FK000321
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|209720765|gb|BW677555.1|BW677555
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|9564338|gb|BE473847.1|BE473847
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|10255640|gb|BE823406.1|BE823406
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|9986791|gb|BE660899.1|BE660899
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|192328239|gb|FK020458.1|FK020458
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|298165798|gb|HO008769.1|HO008769
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|298182306|gb|HO026481.1|HO026481
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|23731993|gb|BU764147.1|BU764147
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|298168618|gb|HO009548.1|HO009548
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|209720766|gb|BW677556.1|BW677556
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|9820183|gb|BE555693.1|BE555693
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGTAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|27423863|gb|CA935383.1|CA935383
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTEST: gi|41145676|gb|CK605887.1|CK605887
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
EST: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAG ATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
genomic: ATGGTTGGCTTTGCAACGGAGATAAGGTCCCACCAGCTGAGTTTGCAAAGgtatttttct ... gacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTT
gacaaacatttttttccaatttgttgttatcaataacttttcactgacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCT
cactgac putative branch site (score: 2)
atttttttccaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaaggataaataagaatctggttcatttgaaatcaatctagagacaaacatttttttccaatttgttgttatcaataacttttcactgacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG