Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccaaagatcttattgagctacaaccttcatataagcaggcatggttaatggagaactcagctggcattaacattcatctttttttccctctttctggtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT

Basic information

species Glycine max
transcript GLYMA04G28970.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G28970.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G379804_T01 (Zea mays), 3'ss of exon 2
gtacccaaagatcttattgagctacaaccttcatataagcaggcatggttaatggagaactcagctggcattaacattcatctttttttccctctttctggtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAAC-CAAATCAGGGACAAACT
                                                        | ||   ||| |   || | |     ||||| ||||  ||    | |    |   |||  |   |      |||     | |  ||||| |||||||||| ||||||||||| |||||||| || |||||  | ||  |  |  ||| | | | |  | |||||| | | || || |   |      
--------------------------------------------------------gtacgt-gcttgtgctatcttgtccatttttatcccctttgtgtgctattgaaaataaattttctgaaattttgcaatttccttagGATGATTGGGATCCCGATTGGCAATCAACATCTAGCAGCAAAGTTGCTTACATGATTGAGAAGCTAAGAAGTCTGCGAGAAGCACACATGAATCATGGGA-

upper sequence: GLYMA04G28970.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 3'ss of exon 4
gtacccaaagatcttattgagctacaaccttcatataagcaggcatggt-taatggagaactcagctggcattaacattcatctttttttccctctttc--tggtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT
                                      | |  |   ||   ||  | |  |    |   ||  |  ||| ||   ||||| ||| |       | | | ||| |   ||  ||||| | || | ||     ||||||| ||||||||||||||||||||| |||||||| || |||||  | ||| | ||  ||||  | ||||||||||  |   | ||   |  ||    ||
--------------------------------------gtaaactaagtactataaatatgttgaatcatatctattttcttcaaattttcactcctcaaacaatgttctatgatttgatatattgtggtttttata-----cagGATACTTGGGATCCTGATTGGCAATCAACATCTAGCAGCAAAGTGACTTATATTGTAAAGAGACTAAAAGCTTTGCAGGAGGCTAATAGAAAGAGTGGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctctttctggtttgcaatggtaacatgcattgttgattgtttaatacccagGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACT
                                    ttgattgtttaata  TA-rich tract