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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattaagataattccaatagaaaagttatttttgaaggttttttttctttttttctgtctctaaggattggattatgtgaaaagGATGGAGAAGATTAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGACCATGTTGATGACCTTGTACAAAGGC

Basic information

species Glycine max
transcript GLYMA04G15590.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g58910.1 (Oryza sativa), 3'ss of exon 3
--------------------gtaaaattaagataattccaatagaaaagttatttttgaaggttttttttctttttttctgtctctaaggattggattatgtga----aaagGATGGAGAAGATTAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGACCATGTTGATGACCTTGTACAAAGGC
                    | ||||| ||  | |    || |  ||    |   | | || |    |   |||    |   |  |    ||||   | | | |    | |||||||||||| || || ||||||||||||| ||||| || |||||||  || ||  ||||||||||||| ||  | ||| |||||||  ||||||| |||
gtagattatatatatcttctgaaaaatgaaactgagatgaacattaag--cagactagcagatcaagtcagtttggagcaagcatttgacattgctgtgtataattcgacagGATGGAGAAGGTTGACCTGAAGAAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATGATGACGCTGTACAAGGGC

upper sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------gtaaaattaagataattccaatagaaaagttatttttgaaggttttttttctttttttc------tgtctcta----aggattgg-attatg----tgaaaagGATGGAGAAGATTAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGACCATGTTGATGACCTTGTACAAAGGC
                            |  ||    || ||  |  |    |  ||||||||   |||||  | | ||  |  |      |   | |     | | |||  || |||    ||||||| |||||||| ||  |||||||||  || || |||||||| ||||| || || ||  | ||||| ||||||||| | ||| |||||||||||||||| || 
gtacgattatcaatctcaatatataatcatcatcgtcatgatcgctgtgatcattttatttttcggggtttggtgtattgatcacatgggctaattttgtaacatgtttgacatgatggaattgaaaagAATGGAGAAAATAGACATGAAGAGAGTAAGGTGCCAAGCAAAGGTTGTTGGGACTATTGTGACAGTGGCTGGGGCAATGGTGATGACCTTGTACAAGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaggttttttttctttttttctgtctctaaggattggattatgtgaaaagGATGGAGAAGATTAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGACCATGTTGATGACCTTGTACAAAGGC
         ttttttttcttttttt  TA-rich tract