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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

Basic information

species Glycine max
transcript GLYMA04G14640.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatatt-atgt----attctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
|| |||||||| || | ||| | | | | | | || | | ||| ||| | || || ||| | | |||| || |||| || || || || || |||||||| ||||| ||||||||| |||||||||| |||||||||||| || | || | ||||| || ||||| ||||
---ttctgcatttatcc-ttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttg-attgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G409407_T02 (Zea mays), 3'ss of exon 3
attttaagcatttattta--ttataaaatgaaaatatgctaaac-atgagttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
| | |||| | || || | | | | | | | | | | ||| | || || | || | ||||| | | || || |||| || || ||||| || |||||||| ||||| ||||| ||| |||| ||||| |||||||||||| ||| | || | ||||| || ||||| ||||
-tgatcctcattcagctaccttctgacaagccactcttttcatcgatgtatcgtg-ttacatccttggtgctgatgattagagttaatctcatcg-attgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGATCACCGCCGCAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 3
attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtt--tctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
| ||| || | | | | || | | | | | | || || | |||| |||||||| | | | |||| || |||| || || ||||| |||| |||||| ||||| ||||| ||| |||| ||||| |||||||||||| || | || | ||||| || ||||| ||||
aattttgctatctcatggtgtttaatttttgctgttccttttctacttgttgaattaccttgtgttatcttgatatta-gaagtaactatgttg-attgcagGCTGCGGGCATTCCAAAAAGGCTTGCTCCAACCATTGGCATTTCTGTGGATCACCGCCGCAAGAACAAATCCCTTGAGGGGCTGCAGGCCAATGTCCAGA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 3
attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
||| | || | || || | | || | | || | | | | | | | | | | | || |||| | | || | |||| || || || || || ||| | || |||||||| || ||| |||||||||| || |||||||||||||||||||| |||| || | ||||| || |
gtttggattcttgaatttttcaatgttctaagtgttctct-ctttatagatattaagatgaaagctcatagttgcttgc-ttctttttgtttttttttagGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 3
--attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatatt-atgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
|| | | || ||| | || || | | | | | || || ||| | | | ||| || | | | |||| |||||| || || || || || ||| | || || |||||||||||||||||||| ||||| ||||||||||| |||||||| |||| ||| | ||||| ||||
ttgttgtgattgttgattgaa-attggctggatttttctttactatcggtatcatgtttcatttcttgctgaacattgatctgattgtttgattaa--tatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 3
attttaag---catttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
|||| | |||| ||| | | || | |||| || | | | | || || | | | || | ||| | || ||| || ||| ||||| ||||| ||||| ||||| || || ||||||||||||||||||||||| |||| |||||| || | |||||||| ||||||||||| || |
-tttttggtctcattgctttttgacaacctattgttatgg-aatcccatggttta-ttctatacaaatctccaaaattttacatgctcctctgtacattccagGTGGCAGGTATTCCAAAAAAACTTGCTCCGACCATTGGTATTGCTGTTGATCATCGTCGCAGGAACCGATCACTAGAAAGTCTCCAAGCTAATGTCCAAA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 3
attttaagcatttatttattataaaatgaaaatatgctaaacatga-gttctgcttttagatatgtttctgatattatg-tattctctatatt--atgcca-tagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
| || | || | || | | | || | || | | | || | ||| | | | || || | ||| || | ||||| || || || || || |||||||| || || ||||||||||||||||| |||||||||||||| || | |||||| ||||| || | || | |
-----catgatgaacttggtgtagggttccacctttcttggtacgatgatttatggttttttttgtctgggttgttctgacgacaatcaaattgaattttactagGCTGCTGGCATCCCGAAGAAGCTTGCTCCCACTATTGGTATTGCTGTTGACCATCGCCGCAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------------------------------------attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtat---------tctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
| | ||| ||| | ||| | | | | | | | | || | | || ||| | || || ||| | || | | |||| || || || ||||| || ||||| || ||||||||||||||||||||||| | ||||||||||| | ||||| || || || | |||||| |
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttac-agataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttg-gtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------attttaagcatttatttattataaaa-------tgaaaatatgctaaaca------tgagttctgcttttagatatgtttctgatat--------tatgtattct--ctatattat----gccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
|||| | | || || || ||| | || | ||||| | | || || || | | |||||| | | ||| | || | | || || ||||| ||||| ||||||| ||||||||||| || || ||||||||||| || ||| | ||||||||||| | ||||| ||||| |||| || || |
gtacttaacacgtttacatgggatttttcatcttgcttgtatcgagtcccgctacgcgttaaatgatgaactagaatggaaccgcatttgaggaggtgatcggttcccagttgagtcgttcattgaggtagatgtgtgatatactcttggtgagcattattactttttcatttcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACCATAGACGCAAGAACCGATGCTTGGAGAGTCTTCAAGAAAACGTTAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814215|gb|BI786490.1|BI786490
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|12774389|gb|BG239316.1|BG239316
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|209705860|gb|BW675965.1|BW675965
EST:     CATGAAAGTGAGAGCTGGAAGGGGA-TTTCCCTTGAAGAACTC-A-                         --AGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: CATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|20814298|gb|BQ298776.1|BQ298776
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|18734388|gb|BM528153.1|BM528153
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6724689|gb|AW309022.1|AW309022
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|23732733|gb|BU764538.1|BU764538
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|193546735|gb|FK501330.1|FK501330
EST:     ATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|26059098|gb|CA802012.1|CA802012
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCTTTTATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|120533479|gb|EH261612.1|EH261612
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|254337989|gb|GR845452.1|GR845452
EST:     CAACATGAAAGTGAGAAGCTGGAAGGGGATTTT-CCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: CAACATGAAAGTGAG-AGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|7286256|gb|AW598743.1|AW598743
EST:     GAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: GAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15203036|gb|BI425804.1|BI425804
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|254341408|gb|GR855136.1|GR855136
EST:     GAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: GAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6502182|gb|AW203555.1|AW203555
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|19453465|gb|BM954875.1|BM954875
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|21678445|gb|BQ630796.1|BQ630796
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|38193701|gb|CF922907.1|CF922907
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|38192415|gb|CF921621.1|CF921621
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|4293744|gb|AI437949.1|AI437949
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|209709536|gb|BW681226.1|BW681226
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|9900318|gb|BE609286.1|BE609286
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15813220|gb|BI785495.1|BI785495
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GTAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15285759|gb|BI469650.1|BI469650
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|22524921|gb|BU083732.1|BU083732
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6747093|gb|AW317549.1|AW317549
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|254337993|gb|GR845456.1|GR845456
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|8670219|gb|BE191326.1|BE191326
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|8827981|gb|BE211711.1|BE211711
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|7042619|gb|AW472513.1|AW472513
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|19268693|gb|BM884949.1|BM884949
EST:     ACAACATGAAAGTCAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|21677230|gb|BQ629581.1|BQ629581
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|19268958|gb|BM885214.1|BM885214
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|58019572|gb|CX706314.1|CX706314
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|16995671|gb|BM085043.1|BM085043
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|192315595|gb|FK007423.1|FK007423
EST:     GGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: GGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|254337994|gb|GR845457.1|GR845457
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|9901290|gb|BE610258.1|BE610258
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|11274510|gb|BF324863.1|BF324863
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|24136545|gb|BU927055.1|BU927055
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|14008777|gb|BG725381.1|BG725381
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|19053098|gb|BM731765.1|BM731765
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|17023206|gb|BM094240.1|BM094240
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15203336|gb|BI426104.1|BI426104
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|16106184|gb|BI893924.1|BI893924
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGATGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|4395852|gb|AI494849.1|AI494849
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|213592187|gb|DB965978.1|DB965978
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15204350|gb|BI427118.1|BI427118
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|120533320|gb|EH261453.1|EH261453
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|4314143|gb|AI461262.1|AI461262
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|254337988|gb|GR845451.1|GR845451
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6724586|gb|AW308985.1|AW308985
EST:     ATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|21256994|gb|BQ453882.1|BQ453882
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6916448|gb|AW397978.1|AW397978
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|120533365|gb|EH261498.1|EH261498
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|5677540|gb|AI938670.1|AI938670
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|8284791|gb|BE022350.1|BE022350
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|17021504|gb|BM092538.1|BM092538
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|6726002|gb|AW310401.1|AW310401
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTT-CCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|58015231|gb|CX701973.1|CX701973
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|22524434|gb|BU083245.1|BU083245
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|16347230|gb|BI972825.1|BI972825
EST:     ATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
EST: gi|15661801|gb|BI699172.1|BI699172
EST:     ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAG                         GCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT
genomic: ACAACATGAAAGTGAGAGCTGGAAGGGGATTTTCCCTTGAAGAACTCAAGgtaatacttg ... tatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA
                    ttctgat  putative branch site (score: 3)
 atattatgtattctct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtattctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT