Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatatacttgagttaattggattcaacatacgaaatacttgattgtcttggtgcacgaatttgcttgattttttaagacacgatattttcgttttgcagAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG

Basic information

species Glycine max
transcript GLYMA04G09130.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063730|gb|BU578612.1|BU578612
EST:     TTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAG                         AATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG
genomic: TTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGgtttattatt ... cgttttgcagAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     TTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAG                         AATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG
genomic: TTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGgtttattatt ... cgttttgcagAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttggtgcacgaatttgcttgattttttaagacacgatattttcgttttgcagAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCG
                  gcttgat  putative branch site (score: 5)
                                         ttttcgtttt  putative PPT
                    ttgattttttaaga  TA-rich tract