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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcactattttttcttcccgcaggacggagttgctctgcaggggttgttttactttattgtggatattaagttctaactttgcgatgattatatcttgtagTGCATTAGGTGGTAGTCATGGTGTTCCGCGAGTTCATTATAAGGGACGGCAAGGTGACTACTATATTATG

Basic information

species Glycine max
transcript GLYMA04G09070.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgagt-tcactattttttcttcccgcaggacggagttgctctgcaggggttgttttactttattgtggatat--taagtt--ctaactttgcg--atgattatatcttgtagTGCATTAGGTGGTAGTCATGGTGTTCCGCGAGTTCATTATAAGGGACGGCAAGGTGACTACTATATTATG
|||||  | |   | | || |    |      ||| |     |      |||    || ||| ||    | |   | || |  ||||   |||   || ||    || |  |||||| | ||||| ||||||||||| || |||||||||| |||||| ||||| || || |  ||  | |||
gtgagcgttatggtctcttgtctttggctctaggattcatcttctgcttgttcaaatagtttgtttataaaaggatgagataactaatgatgctttatcatctgttcgtccagTGCACTTGGTGGCAGTCATGGTGTGCCACGAGTTCATTTTAAGGGTCGGCAGGGCGATTTTTACGTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttactttattgtggatattaagttctaactttgcgatgattatatcttgtagTGCATTAGGTGGTAGTCATGGTGTTCCGCGAGTTCATTATAAGGGACGGCAAGGTGACTACTATATTATG
                         ttctaac  putative branch site (score: 1)
                 atattaagttctaa  TA-rich tract