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gttagtacctgactatatatatatactttctttctcgtcatttccggtggcattgtactctgaactttttatgatgttctgttctgcattattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAATTGAGTGCTAAGCTCATTTTTGGGGCTGACAG
species | Glycine max |
transcript | GLYMA04G08560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGT GTCACGCAACAAGG-A-ATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|192306580|gb|FG996242.1|FG996242
genomic: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|254321007|gb|GR827456.1|GR827456
genomic: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|17022645|gb|BM093679.1|BM093679
genomic: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: GCAACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|192334119|gb|FK026276.1|FK026276
genomic: GCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: CTTGTTTTGAATGTAGTGGGGCGAGTTGAGCAGCAACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|192328738|gb|FK023196.1|FK023196
genomic: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: CTTGTTTTGAATGTAGTGGGGCGAGTTGAGCAGCAACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAEST: gi|192326177|gb|FK016279.1|FK016279
genomic: CTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
EST: AACTCATAAATGACGT GTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
genomic: AACTCATAAATGACGTgttagtacct ... ttattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAA
ccggtggcattgtactctgaactttttatgatgttctgttctgcattattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAATTGAGTGCTAAGCTCATTTTTGGGGCTGACAG
ttattttc CT-rich tract
aactttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtacctgactatatatatatactttctttctcgtcatttccggtggcattgtactctgaactttttatgatgttctgttctgcattattttcagGTCACGCAACAAGGAATATATTCCGATTGTTGGGCTAGCTGATTTTAATAAATTGAGTGCTAAGCTCATTTTTGGGGCTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA