1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG
species | Glycine max |
transcript | GLYMA04G08530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|192327626|gb|FK020659.1|FK020659
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|298178450|gb|HO024185.1|HO024185
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAEST: gi|298170636|gb|HO019260.1|HO019260
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|151394888|gb|EV264759.1|EV264759
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|192331951|gb|FK026735.1|FK026735
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|192327625|gb|FK020658.1|FK020658
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|298185114|gb|HO030327.1|HO030327
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTEST: gi|17518633|gb|BM187675.1|BM187675
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCT
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|208250509|gb|GE046930.1|GE046930
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: ACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAAACTCAAAAATAG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATEST: gi|192299133|gb|FG992879.1|FG992879
genomic: ACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAA-CTCAAAAAT-Ggtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAAT
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|298182837|gb|HO031572.1|HO031572
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATEST: gi|192303639|gb|FG994533.1|FG994533
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGAT
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|151412807|gb|EV282619.1|EV282619
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACCCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|208048593|gb|GD847524.1|GD847524
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|192299132|gb|FG992878.1|FG992878
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAEST: gi|298191108|gb|HO038587.1|HO038587
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATEST: gi|8282557|gb|BE020118.1|BE020118
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGAT
EST: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTNTCACAACTCAAAAATG GTTCGAACTGTAAGAGTTGAGAAGAGGATTAATGAGATTGGTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
gaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG
ttttcat CT-rich tract
ttttcatgtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA