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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcattttacattataattttgtttctgtttttcccatttcctaaatcattgtacattacatgtatgtttgtctaactctattgttcactgtgttgcagGGTTTGTGTTTGGACGGGAGTCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTGTTTGGC

Basic information

species Glycine max
transcript GLYMA04G07390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07390.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 3
gtacggcattttacattataattttgtttctgtttttcccatttcctaaatcattgtacattaca-tgtatgtttgtctaactctattgttcac-tgtgttgcagGGTTTGTGTTTGGACGGGAGTCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTGTTTGGC
||| |  | |  |    || |||||       || |||    |    ||| |||  |  || | |   |||||||| |||  |   || || |  | | || ||||||||| || ||||| |   |  |  |  |||| |||||||| |||||||||||||| || ||| | |||||||||||  ||||||||||  | ||||||
gtaagagaatcaatcccatcatttt--ccacattgttctatgtcatcaaagcatcatgaatcagaacatatgtttgcctattttatttatttatgttttttacagGGTTTGCGTCTGGACAGCTTTAATGCTATTTCTTCTTGCAATATTCAATGCTTGCACCATCATCTCTAGGTTTACAAGGGTTGCAGGGGAACTCTTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcattgtacattacatgtatgtttgtctaactctattgttcactgtgttgcagGGTTTGTGTTTGGACGGGAGTCTTTTTGATTCTGCTTGCAATTTTCAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTGTTTGGC
                          gtctaac  putative branch site (score: 2)
        tacatta  TA-rich tract