1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttattattatttcttgagcagtcatatagatactggtttttaattacactttatataacgacacagtatcttatttctttacctgatatatttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTG
species | Glycine max |
transcript | GLYMA04G06310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTCGGCGCAAGCATTATTTTAAGCAAGAG ATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAAEST: gi|192305673|gb|FG994355.1|FG994355
genomic: CTTGTTCGGCGCAAGCATTATTTTAAGCAAGAGgtgagatttg ... tttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAA
EST: ATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAG ATAGAGGAAAAA-GACTAG-TAGTAAACCTGCTGCTGAACTTCTAGAAAA-EST: gi|51337820|gb|CO981686.1|CO981686
genomic: ATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAGgtgagatttg ... tttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAA
EST: ATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAG ATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAA
genomic: ATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAGgtgagatttg ... tttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAA
acactttatataacgacacagtatcttatttctttacctgatatatttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTG
tttttgcc CT-rich tract
tatcttatttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattattatttcttgagcagtcatatagatactggtttttaattacactttatataacgacacagtatcttatttctttacctgatatatttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - -gcagtca
- - - - - - - - - - - - - - gatactg