1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acccttcttggacttattatccttgtaacttgtaattaagtatctttattttttttatgctttagtataaaatctattatttctgtttaaatttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAG
species | Glycine max |
transcript | GLYMA04G05530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: NNTATGTACCTANNNCTTGGATC-TGNCCCGTACCAAACTTGCTTACCAG GTNNNAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAAEST: gi|192315153|gb|FK009977.1|FK009977
genomic: TTTATGTACCTACCCCTTGGATCTTG-CCCGTACCAAACTTGCTTACCAGgtagggatct ... atttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAA
EST: TTTTATGTACCTACCCCTTGGATCTTGCCCGTACCAAACTTGCTTACCAG GTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAAEST: gi|14008663|gb|BG725267.1|BG725267
genomic: TTTTATGTACCTACCCCTTGGATCTTGCCCGTACCAAACTTGCTTACCAGgtagggatct ... atttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAA
EST: TTTTATGTACCTACCCCTTGGATCTTGCCCGTACCAAACTTGCTTACCAG GTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAAEST: gi|105637489|gb|DY577143.1|DY577143
genomic: TTTTATGTACCTACCCCTTGGATCTTGCCCGTACCAAACTTGCTTACCAGgtagggatct ... atttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAA
EST: ACCAAACTTGCTTACCAG GTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAA
genomic: ACCAAACTTGCTTACCAGgtagggatct ... atttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAA
ttattttttttatgctttagtataaaatctattatttctgtttaaatttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAG
tttttat CT-rich tract
tttagtataaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccttcttggacttattatccttgtaacttgtaattaagtatctttattttttttatgctttagtataaaatctattatttctgtttaaatttttatagGTGGCAGACACCAGAGGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-cccttct
- - - - - - - - - - ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt