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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattgaaaactttgttcaattctcaaatattaattacagtaacattgcttcttgtttactggctcaatctaatgtattttatttgtcttaattttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATT

Basic information

species Glycine max
transcript GLYMA04G04400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208227192|gb|GE022389.1|GE022389
EST:     ATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: ATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|58024799|gb|CX711540.1|CX711540
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|208066602|gb|GD866065.1|GD866065
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCGCAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|7925963|gb|AW831989.1|AW831989
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|58024179|gb|CX710920.1|CX710920
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|58016625|gb|CX703367.1|CX703367
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|22931543|gb|BU548682.1|BU548682
EST:     TTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
EST: gi|58014188|gb|CX700930.1|CX700930
EST:     TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCT                         GGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT
genomic: TGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTgtaagtttct ... attttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcttgtttactggctcaatctaatgtattttatttgtcttaattttatcagGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATT
                                        tcttaat  putative branch site (score: 3)
                                              ttttatc  CT-rich tract
                  tcaatctaatgtattt  TA-rich tract