1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcccatgcttagtaaacacacgttttaagttttctaacttcataacacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGTATCTATCCCCTGCATATCTGTTGAGATAAAG
species | Glycine max |
transcript | GLYMA04G03240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
acacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGTATCTATCCCCTGCATATCTGTTGAGATAAAG
tcataac putative branch site (score: 2)
ctcccctgtttcattt putative PPT
aaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccatgcttagtaaacacacgttttaagttttctaacttcataacacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGTATCTATCCCCTGCATATCTGTTGAGATAAAG
- -ccatgct
- - - - - - - -aacacac
- - - - - - - - - - - - - - - - - - - - - - aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccct