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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgttcatgtttattatttaattatcccttaatgtttcttgctttctgtctatgattaaataattgattctctgggtcccttgatactattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG

Basic information

species Glycine max
transcript GLYMA04G03030.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03030.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G75510.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatttgttcatgtttattatttaattatcccttaatgtttcttgctttctgtctatgattaaataattgattctctgggtcccttgatactattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG
|| | | ||    |||   ||| |  | |   ||    |||  | ||      ||     | ||   |     || |   ||| |  ||        |||||||||||||||||||| |||||||  |||||||| |||||||||||| ||||| ||||||| |||||||| |||
gtctgttttatattttcacattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG

upper sequence: GLYMA04G03030.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 3'ss of exon 3
-------gtatttgtt-catgtttattatttaattatccc-ttaatgtttcttgctttctgtctatgatta-aataattgattctctgggtcccttgatactattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG
        | |   || ||| ||| |  |||  ||||  | ||    ||| ||  ||  ||  |||||||| |||  |   || | |   ||  |   |  |     ||||| ||||| |||||||| ||||| |  |||||||| |||||||||||| |||||||  || ||||||||||||||
gtagctcatctcacttgcatttttttccttttgttattacattggcatttttt--ttgttgcatatgattataatggtcatttttttttctctttaatttattcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207837406|gb|GD806226.1|GD806226
EST:     AAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACC-GGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: AAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|193401525|gb|FK367990.1|FK367990
EST:     TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAAATGCCTGGAATGAT
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCC-AATGCCTGGAATGAT
EST: gi|298168092|gb|HO013355.1|HO013355
EST:     TGCGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGA
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGA
EST: gi|7685262|gb|AW755910.1|AW755910
EST:     TGTGTCGTGAGAGGACAAACAGATCTATGATTAATAATCGACAAATACAG                         GTTATTGATAATGACCGGGGAGTTCTTATGATGCCAATGCCTGGAATGATT
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|298180364|gb|HO025565.1|HO025565
EST:     TGTGTCGTGAGTGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|192308908|gb|FK002132.1|FK002132
EST:     TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|298192192|gb|HO036274.1|HO036274
EST:     TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGA
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGA
EST: gi|15202686|gb|BI425532.1|BI425532
EST:     TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc ... ctattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctgtctatgattaaataattgattctctgggtcccttgatactattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG
       tctatgattaaataat  TA-rich tract