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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatttcttcggttcaagaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG

Basic information

species Glycine max
transcript GLYMA04G02530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02530.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G803949_T02 (Zea mays), 3'ss of exon 3
gtttatttcttcggttcaagaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG
  |     ||   || ||| |    | ||  ||     |||| |  | | |||  ||||    |   |   |   || |||   |    | |||||         ||||||||||| |||||||| | ||||||||| |||||||| |||||||||||||| || |||||| | |
agtggaaactgatgtccaaaatcaaatttttgaataggattaatcca-tagatggcttc---caaacttcttgtttgctgactctgaacccctttta-------ttttcagTGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATAATTCTCGTAGGGACAAAGCTTG

upper sequence: GLYMA04G02530.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G846811_T01 (Zea mays), 3'ss of exon 3
gtttatttcttcggttca--agaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG
|| || |    | ||||   | ||| || ||  ||     |||| |  |   |  | |   ||||  | | |        ||||                 ||||  ||||||||||| |||||||| | ||||||||| |||||||| ||||| |||||||| || |||||| | |
gtgtactgaaacagttctccaaaatccatttttgaataggattaatatagatggctcccaaactttttgtttgctgactctgaaccc-------------cttctattttcagTGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATTATTCTCGTAGGGACAAAGCTTG

upper sequence: GLYMA04G02530.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 3'ss of exon 3
gtttatttcttcggttcaagaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataa--ctgatgaaat-tattgctcttttgatttcttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG
             |||     | | | ||||  |  || || || |      || |||  || | | || | ||  ||||| || | | ||  ||||||||||||   ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| | |
-------------gtt--gccacttatttagtctccta-tttttcattatttttccttgtctaaatttacagaatgctgataaattgttttcttcttttgatttcaa-tttcagTGGATTCCTGAACTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTTGGAACCAAGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014216|gb|CX700958.1|CX700958
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|14258618|gb|BG881526.1|BG881526
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|207827775|gb|GD800368.1|GD800368
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
EST: gi|9563948|gb|BE473457.1|BE473457
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|192331824|gb|FK024928.1|FK024928
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|207836636|gb|GD806633.1|GD806633
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
EST: gi|58024705|gb|CX711446.1|CX711446
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGTTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|58021086|gb|CX707828.1|CX707828
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: gi|151393592|gb|EV263467.1|EV263467
EST:     TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG                         TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG
                              ttgctcttttgatttc  CT-rich tract
     ttagtatatataactg  TA-rich tract