1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agatctagcttatgcttcgtgaaacttgatattactacacgccccgttgtttttatgattgtattgtggttgttttctgaaatttgtgttgtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT
species | Glycine max |
transcript | GLYMA04G01840.7 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACAEST: gi|208237516|gb|GE032584.1|GE032584
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACA
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|207692237|gb|GD676142.1|GD676142
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|208045399|gb|GD841599.1|GD841599
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|193546645|gb|FK503648.1|FK503648
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|193434275|gb|FK399321.1|FK399321
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACEST: gi|193592416|gb|FK545634.1|FK545634
genomic: AAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTT-CGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAAC
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|207761877|gb|GD734150.1|GD734150
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|193629203|gb|FK578151.1|FK578151
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|193621980|gb|FK569216.1|FK569216
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|207832519|gb|GD802663.1|GD802663
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|207717965|gb|GD698319.1|GD698319
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGCGTTCAACAAGGAACATCCCGACAACAAAGEST: gi|207785780|gb|GD757879.1|GD757879
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAG
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGEST: gi|207690945|gb|GD671567.1|GD671567
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTG
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGEST: gi|193535155|gb|FK491699.1|FK491699
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGG
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|208196615|gb|GD994910.1|GD994910
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAGATCCTAACAAGCCAAAGAGGCTTCCTAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|208205358|gb|GE004089.1|GE004089
genomic: AAGATCCTAACAAGCCAAAGAGGCCTCC-AAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|207763040|gb|GD731171.1|GD731171
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTEST: gi|193455897|gb|FK417018.1|FK417018
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
EST: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCAT GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
genomic: AAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATgtaattataa ... gtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGT
gttgtttttatgattgtattgtggttgttttctgaaatttgtgttgtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT
ttttatgattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatctagcttatgcttcgtgaaacttgatattactacacgccccgttgtttttatgattgtattgtggttgttttctgaaatttgtgttgtaattaaagGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA