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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaagagttaggttgattcctctttgcctttcacattgatctattcaaaattcatgtaaacctcacttcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT

Basic information

species Glycine max
transcript GLYMA04G01400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522813|gb|BU081624.1|BU081624
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|33389906|gb|CA853113.1|CA853113
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10843511|gb|BF066800.1|BF066800
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|22522891|gb|BU081702.1|BU081702
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10846479|gb|BF069354.1|BF069354
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|13125350|gb|BG315920.1|BG315920
EST:     TGCTTGATGAAATCATCAACTATGGTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGGGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10847455|gb|BF071548.1|BF071548
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCA
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCA
EST: gi|19348569|gb|BM893101.1|BM893101
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcctttcacattgatctattcaaaattcatgtaaacctcacttcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT
                                     acctcac  putative branch site (score: 3)
                                      cctcacttc  CT-rich tract
                atctattcaaaatt  TA-rich tract