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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcctcatctagccaggtttggttttatatcgtgtatcgttatctgtctaatgtactgaatatgttatgattgttgctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG

Basic information

species Glycine max
transcript GLYMA04G00980.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23051392|gb|BU577079.1|BU577079
EST:     CCCGAAATTGAAAATGGTGATAAAA                         TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
genomic: CCCGAAATTGAAAATGGTGATAAAAgtaagtttcc ... gctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
EST: gi|151397776|gb|EV267649.1|EV267649
EST:     CCCGAAATTGAAAATGGTGATAAAA                         TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
genomic: CCCGAAATTGAAAATGGTGATAAAAgtaagtttcc ... gctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
EST: gi|192302630|gb|FG994882.1|FG994882
EST:     CCCGAAATTGAAAACGGTGATAAAA                         TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
genomic: CCCGAAATTGAAAATGGTGATAAAAgtaagtttcc ... gctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
EST: gi|213620291|gb|DB961436.1|DB961436
EST:     CCCGAAATTGAAAATGGTGATAAAA                         TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
genomic: CCCGAAATTGAAAATGGTGATAAAAgtaagtttcc ... gctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtatcgttatctgtctaatgtactgaatatgttatgattgttgctgcttcagTTATAATGCCTCCTTCAGTCCTTGACCGTCTAG
               gtctaat  putative branch site (score: 3)
                                              ctgcttc  putative PPT
                            aatatgttatgatt  TA-rich tract